Edwin Wang Lab

Cancer Systems Biology and Bioinformatics

Computational tools, protocols and pipelines

 

1. Genome sequencing alignment and variant calling (PDF)

* Updated (2015) genome sequencing alignment and variant calling practice and solutions, Paper, Supp

2. Tools for subclonal analysis of tumors: ABSOLUTE, SciClone, SubCloneSeeker, CLONET, PyClone, TITAN, CloneHD, CHAT, EXPANDS, PhyloWGS, BitPhylogeny, ClonEvo, SCHISM.

3. GWAS protocols 

Basics (in PLOS CB),  Guide 1 (full text),  Guide 2 (full text), and a Tool (easyGWAS).